Variant report

Variant	rs1354112
Chromosome Location	chr1:211098350-211098351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10779546	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10779547	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10779548	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10863871	0.81[CEU][hapmap]
rs11119633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393029	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1501547	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1501553	0.85[YRI][hapmap]
rs1501554	0.82[CEU][hapmap]
rs1501556	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1501561	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs1542887	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1566602	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs1777242	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875437	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062673	0.82[CEU][hapmap];0.85[YRI][hapmap]
rs2088878	0.84[EUR][1000 genomes]
rs2358091	0.90[EUR][1000 genomes]
rs2358092	0.81[CEU][hapmap]
rs4642960	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4951491	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4951492	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4951701	0.80[CEU][hapmap];0.82[YRI][hapmap]
rs4951702	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4951704	0.82[YRI][hapmap]
rs4951706	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs4951708	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4951710	0.84[EUR][1000 genomes]
rs6692020	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6699049	0.85[EUR][1000 genomes]
rs6702809	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs7547937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs924567	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs924568	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs985382	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211093400-211110800	Weak transcription	HSMM	muscle

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