Variant report

Variant	rs1501554
Chromosome Location	chr1:211183521-211183522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210621781..210622300-chr1:211182997..211183964,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779548	0.81[CEU][hapmap]
rs10863871	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119636	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11119639	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12759268	0.81[YRI][hapmap]
rs1354112	0.82[CEU][hapmap]
rs1393029	0.81[CEU][hapmap];0.88[AFR][1000 genomes]
rs1501553	0.83[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501561	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1542887	0.81[CEU][hapmap]
rs1546277	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1566602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1777242	0.82[CEU][hapmap]
rs1846946	0.81[CEU][hapmap]
rs2062673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2088877	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2088878	0.88[AFR][1000 genomes]
rs2102129	0.91[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202095	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2358092	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2358115	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2358117	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4639824	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951491	0.87[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes]
rs4951492	0.85[YRI][hapmap];0.96[AFR][1000 genomes]
rs4951700	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951702	0.81[CEU][hapmap]
rs4951704	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4951710	0.88[AFR][1000 genomes]
rs6686447	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6692020	0.81[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes]
rs6702809	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7415388	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7543777	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs924567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973945	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs985382	0.81[CEU][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211180600-211187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:211181200-211186600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211181400-211185000	Weak transcription	HSMM	muscle
4	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
5	chr1:211182000-211186600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211183400-211185400	Strong transcription	HSMMtube	muscle

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