Variant report

Variant	rs4951491
Chromosome Location	chr1:211203217-211203218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211203078..211205733-chr1:211206241..211207793,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10779546	0.83[AMR][1000 genomes]
rs10779547	0.84[AMR][1000 genomes]
rs10779548	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10863871	0.88[CEU][hapmap]
rs11119633	0.85[EUR][1000 genomes]
rs12741900	0.85[YRI][hapmap]
rs12759268	0.89[YRI][hapmap]
rs1354112	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1393029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1501547	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1501554	0.87[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes]
rs1501556	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1501561	0.87[CEU][hapmap]
rs1542887	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1546277	0.81[CEU][hapmap]
rs1566602	0.86[CEU][hapmap]
rs17188755	0.84[ASN][1000 genomes]
rs1777242	0.95[CEU][hapmap]
rs1846946	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1875437	0.95[CEU][hapmap];0.82[AMR][1000 genomes]
rs2062673	0.87[CEU][hapmap]
rs2088878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2358091	0.81[EUR][1000 genomes]
rs2358092	0.86[CEU][hapmap]
rs2358115	0.88[AFR][1000 genomes]
rs3951251	0.81[AMR][1000 genomes]
rs4639824	0.84[AFR][1000 genomes]
rs4642960	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4951492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951701	0.86[CEU][hapmap]
rs4951702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951704	0.81[CEU][hapmap]
rs4951706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951708	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6686447	0.90[CEU][hapmap]
rs6692020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6699049	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6702809	0.86[CEU][hapmap]
rs7547937	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs924567	0.87[CEU][hapmap]
rs924568	0.86[CEU][hapmap]
rs973945	0.96[AFR][1000 genomes]
rs985382	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
3	chr1:211194400-211209200	Weak transcription	HSMM	muscle
4	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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