Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211070734..211072894-chr1:211089401..211091123,2	K562	blood:
2	chr1:211081640..211084626-chr1:211086454..211089760,4	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10779546	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10779547	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10779548	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10863871	0.81[CEU][hapmap]
rs11119633	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354112	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393029	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs1501547	0.86[EUR][1000 genomes]
rs1501556	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1542887	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1566602	0.81[CEU][hapmap]
rs1777242	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088878	0.82[AMR][1000 genomes]
rs2358091	0.82[EUR][1000 genomes]
rs2358092	0.81[CEU][hapmap]
rs4642960	0.83[EUR][1000 genomes]
rs4951491	0.95[CEU][hapmap];0.82[AMR][1000 genomes]
rs4951492	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs4951701	0.81[CEU][hapmap]
rs4951702	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4951710	0.82[AMR][1000 genomes]
rs6692020	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs6702809	0.81[CEU][hapmap]
rs7547937	0.86[EUR][1000 genomes]
rs924568	0.81[CEU][hapmap]
rs985382	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:211085800-211091000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:211087600-211091400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:211088400-211091000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:211088600-211089600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211088600-211090000	Enhancers	Pancreas	Pancrea
11	chr1:211089000-211090000	Enhancers	Liver	Liver
12	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:211089400-211089600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:211089400-211089800	Enhancers	HSMMtube	muscle
15	chr1:211089400-211090200	Enhancers	HSMM	muscle

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