Variant report

Variant	rs7544121
Chromosome Location	chr1:94381859-94381860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10489606	0.89[AMR][1000 genomes]
rs12065890	0.89[AMR][1000 genomes]
rs12068954	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12078344	0.89[AMR][1000 genomes]
rs17110613	0.81[AFR][1000 genomes]
rs17878538	0.89[AMR][1000 genomes]
rs17885147	1.00[ASN][1000 genomes]
rs35650636	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56324350	0.89[AMR][1000 genomes]
rs59101071	0.89[AMR][1000 genomes]
rs60680584	0.81[AFR][1000 genomes]
rs61564641	0.84[AFR][1000 genomes]
rs6677068	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7541690	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7543184	0.82[AFR][1000 genomes]
rs7548581	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523355	chr1:94351328-94385591	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94376000-94382000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:94381800-94382400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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