Variant report

Variant	rs755372
Chromosome Location	chr8:54405380-54405381
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10504154	0.82[ASN][1000 genomes]
rs10958369	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10958372	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11776806	0.90[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11778924	0.90[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs11781325	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12541575	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13273113	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13279206	0.82[ASN][1000 genomes]
rs13280807	0.82[ASN][1000 genomes]
rs2068035	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2126793	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2376145	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7833232	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54399200-54408200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:54400000-54407400	Weak transcription	Left Ventricle	heart
3	chr8:54400200-54407600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:54401000-54412600	Weak transcription	Aorta	Aorta
5	chr8:54401400-54406800	Weak transcription	Right Ventricle	heart
6	chr8:54401600-54407400	Weak transcription	Ovary	ovary
7	chr8:54403400-54405800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:54404400-54407800	Enhancers	K562	blood
9	chr8:54404800-54405600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:54404800-54405800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:54404800-54410200	Enhancers	Fetal Heart	heart
12	chr8:54405000-54405400	Enhancers	Lung	lung
13	chr8:54405000-54405600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:54405000-54405600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:54405000-54405600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:54405000-54406000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:54405000-54408600	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:54405200-54405400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:54405200-54405600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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