Variant report

Variant	rs10958369
Chromosome Location	chr8:54410208-54410209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10504154	0.83[ASN][1000 genomes]
rs10958370	0.81[EUR][1000 genomes]
rs10958372	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11776806	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11778924	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11781325	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12541575	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13273113	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13279206	0.83[ASN][1000 genomes]
rs13280807	0.83[ASN][1000 genomes]
rs1904072	0.81[CEU][hapmap]
rs2068035	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2376145	0.80[EUR][1000 genomes]
rs755372	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833232	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Response to antineoplastic agents	21659360	GWAS catalog

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54401000-54412600	Weak transcription	Aorta	Aorta
2	chr8:54409200-54411400	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:54409600-54415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:54409600-54426600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:54410000-54416200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:54410200-54411200	Weak transcription	Left Ventricle	heart
7	chr8:54410200-54412600	Weak transcription	Fetal Heart	heart
8	chr8:54410200-54414800	Weak transcription	Right Ventricle	heart
9	chr8:54410200-54421600	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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