Variant report

Variant	rs13273113
Chromosome Location	chr8:54406300-54406301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10958369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10958370	0.85[EUR][1000 genomes]
rs11781325	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2068035	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2126793	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2376145	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs755372	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13273113	RP11-1081M5.1	cis	Artery Tibial	GTEx
rs13273113	RP11-1081M5.1	cis	Artery Aorta	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54399200-54408200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:54400000-54407400	Weak transcription	Left Ventricle	heart
3	chr8:54400200-54407600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:54401000-54412600	Weak transcription	Aorta	Aorta
5	chr8:54401400-54406800	Weak transcription	Right Ventricle	heart
6	chr8:54401600-54407400	Weak transcription	Ovary	ovary
7	chr8:54404400-54407800	Enhancers	K562	blood
8	chr8:54404800-54410200	Enhancers	Fetal Heart	heart
9	chr8:54405000-54408600	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:54405400-54409200	Weak transcription	Lung	lung
11	chr8:54405400-54409400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:54405800-54406600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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