Variant report

Variant	rs7553931
Chromosome Location	chr1:225870230-225870231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10915857	0.90[AFR][1000 genomes]
rs12048956	0.82[AFR][1000 genomes]
rs4653651	0.86[YRI][hapmap]
rs6426082	0.89[AFR][1000 genomes]
rs6694288	0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs6694856	0.87[LWK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs72753086	0.89[EUR][1000 genomes]
rs7519220	0.82[YRI][hapmap]
rs7552440	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225865400-225872600	Weak transcription	Aorta	Aorta
2	chr1:225865400-225878600	Weak transcription	Right Atrium	heart
3	chr1:225865600-225888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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