Variant report

Variant	rs7554541
Chromosome Location	chr1:217109044-217109045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11572498	0.93[ASN][1000 genomes]
rs11572499	0.93[ASN][1000 genomes]
rs17044346	0.89[ASN][1000 genomes]
rs17044349	0.89[ASN][1000 genomes]
rs17044372	0.95[ASN][1000 genomes]
rs17044374	0.95[ASN][1000 genomes]
rs7548082	0.94[ASN][1000 genomes]
rs7551571	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217101200-217109600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:217103800-217109600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:217104000-217109400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:217104200-217109200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:217104200-217109600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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