Variant report

Variant	rs17044346
Chromosome Location	chr1:217101880-217101881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10492958	1.00[ASW][hapmap];0.86[AFR][1000 genomes]
rs10492960	0.86[AFR][1000 genomes]
rs11572489	0.86[AFR][1000 genomes]
rs11572495	1.00[ASW][hapmap]
rs11572498	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11572499	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11572510	0.81[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11572513	0.81[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs12755398	0.86[AFR][1000 genomes]
rs1339213	1.00[AFR][1000 genomes]
rs17044349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044372	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17044374	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34783704	0.94[EUR][1000 genomes]
rs34936607	0.94[EUR][1000 genomes]
rs6683415	0.94[EUR][1000 genomes]
rs71643427	0.94[EUR][1000 genomes]
rs7548082	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7551571	0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs7554541	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217093400-217104800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:217097000-217102800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:217097800-217102000	Enhancers	Fetal Intestine Small	intestine
5	chr1:217098000-217102000	Enhancers	Fetal Intestine Large	intestine
6	chr1:217100600-217102000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:217101000-217102600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:217101000-217103000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:217101000-217103600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:217101200-217109600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:217101800-217102600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:217101800-217103200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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