Variant report

Variant	rs11572495
Chromosome Location	chr1:217110899-217110900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10492958	1.00[ASW][hapmap];0.82[CEU][hapmap];0.82[TSI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10492960	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11572489	0.91[CEU][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11572499	1.00[ASW][hapmap]
rs12755398	0.91[CEU][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17044346	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217109200-217111200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:217109400-217111200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:217109600-217111200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:217109600-217111200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:217109600-217112000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:217109600-217113800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:217109600-217114400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:217110000-217113000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:217110200-217111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:217110600-217111000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:217110800-217111000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:217110800-217111200	Enhancers	Fetal Muscle Leg	muscle
14	chr1:217110800-217111400	Enhancers	Fetal Heart	heart
15	chr1:217110800-217112200	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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