Variant report

Variant	rs10492960
Chromosome Location	chr1:217122670-217122671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10492958	0.84[CEU][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11572489	0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11572495	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11572499	0.86[AFR][1000 genomes]
rs11587690	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12755398	0.85[CEU][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1339213	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17044346	0.86[AFR][1000 genomes]
rs17044587	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2818796	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs35271799	0.90[AMR][1000 genomes]
rs4846797	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4846798	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4846799	0.81[CHB][hapmap];0.81[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs920170	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:217118800-217125400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:217119600-217125400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:217119600-217125400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:217119800-217126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:217120400-217126200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:217121200-217125400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:217121400-217125600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links