Variant report

Variant	rs35271799
Chromosome Location	chr1:217148507-217148508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217147953..217150849-chr1:217152542..217155478,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10492958	0.90[AMR][1000 genomes]
rs10492960	0.90[AMR][1000 genomes]
rs11572443	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11572453	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11572454	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11572489	0.90[AMR][1000 genomes]
rs11587690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12741622	0.81[EUR][1000 genomes]
rs12743080	0.83[EUR][1000 genomes]
rs12755398	0.90[AMR][1000 genomes]
rs1416538	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1556891	0.94[ASN][1000 genomes]
rs17041530	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17041540	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17044587	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17044788	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17044806	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818796	0.90[ASN][1000 genomes]
rs34250841	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34710011	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846797	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4846798	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4846799	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6690530	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71643432	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71643434	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71643435	0.81[EUR][1000 genomes]
rs71643436	0.84[ASN][1000 genomes]
rs867408	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867409	0.83[EUR][1000 genomes]
rs867410	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs920170	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468149	chr1:217134966-217203091	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv549204	chr1:217134966-217203091	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217143800-217149000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:217147600-217148600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:217147800-217148800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:217148000-217149000	Enhancers	Brain Hippocampus Middle	brain
5	chr1:217148400-217149200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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