Variant report

Variant	rs11572489
Chromosome Location	chr1:217112529-217112530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10492958	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10492960	0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11572495	0.91[CEU][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11572499	0.86[AFR][1000 genomes]
rs11587690	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12755398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339213	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17044346	0.86[AFR][1000 genomes]
rs17044587	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35271799	0.90[AMR][1000 genomes]
rs4846797	0.85[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4846798	0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4846799	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs920170	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217109600-217113800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:217109600-217114400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:217110000-217113000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:217111200-217112800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:217111200-217113800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:217111200-217118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:217112000-217117600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:217112200-217113000	Weak transcription	Pancreas	Pancrea
10	chr1:217112200-217117800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:217112400-217117800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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