Variant report

Variant	rs11587690
Chromosome Location	chr1:217136449-217136450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217135654..217136486-chr1:217505828..217506401,2	MCF-7	breast:
2	chr1:217134480..217137377-chr1:217143582..217146918,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10492958	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10492960	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11572443	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11572453	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11572454	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11572489	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12741622	0.83[EUR][1000 genomes]
rs12743080	0.85[EUR][1000 genomes]
rs12755398	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1416538	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1556891	0.87[ASN][1000 genomes]
rs17041530	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17041540	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17044587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17044788	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17044806	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2818796	0.99[ASN][1000 genomes]
rs34250841	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34710011	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35271799	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4846797	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4846798	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4846799	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690530	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71643432	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71643434	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71643435	0.83[EUR][1000 genomes]
rs867408	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867409	0.85[EUR][1000 genomes]
rs867410	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs920170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468149	chr1:217134966-217203091	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv549204	chr1:217134966-217203091	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links