Variant report

Variant	rs34783704
Chromosome Location	chr1:217089102-217089103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11572498	0.94[EUR][1000 genomes]
rs11572499	0.92[EUR][1000 genomes]
rs11572510	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11572513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044346	0.94[EUR][1000 genomes]
rs17044349	0.94[EUR][1000 genomes]
rs17044372	0.94[EUR][1000 genomes]
rs17044374	0.94[EUR][1000 genomes]
rs34936607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71643427	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7548082	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217082000-217095000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:217086400-217091000	Enhancers	Fetal Heart	heart
3	chr1:217088400-217089200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:217088400-217090400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:217088600-217089800	Weak transcription	Left Ventricle	heart
6	chr1:217088600-217092400	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:217088800-217089200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
9	chr1:217089000-217090000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:217089000-217090600	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links