Variant report

Variant	rs11572510
Chromosome Location	chr1:217093153-217093154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11117706	1.00[ASW][hapmap]
rs11572498	0.94[EUR][1000 genomes]
rs11572499	0.81[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11572513	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17044346	0.81[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17044349	0.81[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17044372	0.94[EUR][1000 genomes]
rs17044374	1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs34783704	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34936607	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683415	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71643427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7548082	0.81[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217082000-217095000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
3	chr1:217089200-217099400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:217091000-217097000	Weak transcription	Fetal Heart	heart
5	chr1:217092400-217093200	Enhancers	Psoas Muscle	Psoas
6	chr1:217092400-217093400	Enhancers	Fetal Muscle Leg	muscle
7	chr1:217092800-217093200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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