Variant report

Variant	rs17044374
Chromosome Location	chr1:217109912-217109913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11572498	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11572499	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11572510	1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11572513	1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17044346	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17044349	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17044372	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34783704	0.94[EUR][1000 genomes]
rs34936607	0.94[EUR][1000 genomes]
rs6683415	0.94[EUR][1000 genomes]
rs71643427	0.94[EUR][1000 genomes]
rs7548082	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7551571	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs7554541	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217109200-217110400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:217109200-217111200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:217109400-217111200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:217109600-217110200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:217109600-217111200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:217109600-217111200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:217109600-217112000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:217109600-217113800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:217109600-217114400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:217109800-217110800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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