Variant report

Variant	rs7555365
Chromosome Location	chr1:168803226-168803227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1546880	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169266	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200560	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200563	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200564	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200566	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200567	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200568	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200569	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs200570	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs200572	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200574	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200576	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2038098	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056971	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36001119	0.83[EUR][1000 genomes]
rs6680820	0.85[EUR][1000 genomes]
rs7524938	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs909805	0.93[EUR][1000 genomes]
rs986617	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168799200-168804000	Enhancers	Fetal Intestine Small	intestine
2	chr1:168799200-168804000	Enhancers	Stomach Mucosa	stomach
3	chr1:168800200-168804000	Enhancers	Fetal Intestine Large	intestine
4	chr1:168801600-168803800	Enhancers	Left Ventricle	heart
5	chr1:168801600-168804200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:168801800-168803800	Enhancers	Right Ventricle	heart
7	chr1:168801800-168806000	Enhancers	Fetal Heart	heart
8	chr1:168802600-168803400	Enhancers	Lung	lung
9	chr1:168802600-168803600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:168802600-168803800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:168802600-168803800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:168802600-168803800	Enhancers	Fetal Muscle Leg	muscle
13	chr1:168802600-168803800	Enhancers	Pancreas	Pancrea
14	chr1:168802600-168804000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr1:168802600-168804000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:168802600-168804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:168802800-168803400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:168802800-168803600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr1:168802800-168803800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:168802800-168803800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr1:168802800-168803800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:168802800-168803800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:168802800-168803800	Enhancers	Colonic Mucosa	Colon
24	chr1:168802800-168803800	Enhancers	Fetal Thymus	thymus
25	chr1:168802800-168803800	Enhancers	Small Intestine	intestine
26	chr1:168802800-168803800	Enhancers	Dnd41	blood
27	chr1:168802800-168803800	Flanking Active TSS	HepG2	liver
28	chr1:168802800-168804000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr1:168802800-168804000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr1:168802800-168804000	Enhancers	Fetal Lung	lung
31	chr1:168802800-168805800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr1:168803000-168803400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:168803000-168803400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:168803000-168803400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr1:168803000-168803400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr1:168803000-168803400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:168803000-168803400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:168803000-168803400	Enhancers	Brain Hippocampus Middle	brain
39	chr1:168803000-168803400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr1:168803000-168803800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:168803000-168803800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr1:168803000-168803800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:168803000-168803800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:168803000-168803800	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr1:168803000-168803800	Enhancers	Fetal Stomach	stomach
46	chr1:168803000-168803800	Enhancers	Right Atrium	heart
47	chr1:168803000-168803800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr1:168803000-168804000	Enhancers	Ovary	ovary
49	chr1:168803000-168804000	Enhancers	A549	lung
50	chr1:168803200-168803600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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