Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1546880	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861509	1.00[CHB][hapmap]
rs169266	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs200560	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs200563	0.99[EUR][1000 genomes]
rs200564	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs200566	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200567	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs200568	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200569	0.95[EUR][1000 genomes]
rs200570	0.94[EUR][1000 genomes]
rs200572	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs200574	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs200576	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2038098	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056971	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36001119	0.87[EUR][1000 genomes]
rs6680820	0.90[EUR][1000 genomes]
rs7524938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7555365	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857641	0.84[EUR][1000 genomes]
rs909805	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs986617	SUPT5H	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168803800-168814600	Weak transcription	Left Ventricle	heart
2	chr1:168808200-168808800	Enhancers	Stomach Mucosa	stomach
3	chr1:168808600-168811400	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search: