Variant report

Variant	rs909805
Chromosome Location	chr1:168810748-168810749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1546880	0.87[EUR][1000 genomes]
rs169266	0.98[EUR][1000 genomes]
rs200560	0.98[EUR][1000 genomes]
rs200563	0.98[EUR][1000 genomes]
rs200564	0.98[EUR][1000 genomes]
rs200566	0.98[EUR][1000 genomes]
rs200567	0.98[EUR][1000 genomes]
rs200568	0.98[EUR][1000 genomes]
rs200569	0.94[EUR][1000 genomes]
rs200570	0.92[EUR][1000 genomes]
rs200572	0.98[EUR][1000 genomes]
rs200574	0.96[EUR][1000 genomes]
rs200576	0.84[EUR][1000 genomes]
rs2038098	0.87[EUR][1000 genomes]
rs2056971	0.87[EUR][1000 genomes]
rs36001119	0.85[EUR][1000 genomes]
rs6680820	0.88[EUR][1000 genomes]
rs7524938	0.98[EUR][1000 genomes]
rs7555365	0.93[EUR][1000 genomes]
rs857641	0.82[EUR][1000 genomes]
rs986617	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168803800-168814600	Weak transcription	Left Ventricle	heart
2	chr1:168808600-168811400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:168810200-168811200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:168810400-168816000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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