Variant report
| Variant | rs7588035 |
|---|---|
| Chromosome Location | chr2:180669808-180669809 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10153833 | 0.93[CEU][hapmap] |
| rs10169684 | 0.83[EUR][1000 genomes] |
| rs10183495 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs10211004 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs10930887 | 0.89[CEU][hapmap] |
| rs13014995 | 0.83[CEU][hapmap] |
| rs13398994 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs13399189 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs13399303 | 1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13410767 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1352111 | 0.89[CEU][hapmap] |
| rs165374 | 0.92[CEU][hapmap] |
| rs165379 | 0.89[CEU][hapmap] |
| rs165380 | 0.92[CEU][hapmap] |
| rs187745 | 0.82[CEU][hapmap] |
| rs194674 | 0.89[CEU][hapmap] |
| rs259833 | 0.89[CEU][hapmap] |
| rs357712 | 0.89[CEU][hapmap] |
| rs357714 | 0.92[CEU][hapmap] |
| rs4894131 | 0.88[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6725456 | 0.82[CEU][hapmap] |
| rs6752731 | 0.85[CEU][hapmap] |
| rs7557122 | 0.85[CEU][hapmap] |
| rs7570985 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7573137 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7597666 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428731 | chr2:180629389-180805171 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:180669400-180670000 | Enhancers | Right Atrium | heart |
| 2 | chr2:180669600-180670000 | Enhancers | Skeletal Muscle Male | skeletal muscle |
