Variant report

Variant	rs13410767
Chromosome Location	chr2:180667929-180667930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10183495	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185471	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs10195952	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs10205122	0.83[EUR][1000 genomes]
rs13388545	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs13398994	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399189	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407401	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs13418648	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1351416	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs1352110	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1480706	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs1480707	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs1486234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs16867014	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1906012	0.81[CEU][hapmap]
rs4894128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs4894129	0.95[EUR][1000 genomes]
rs4894130	0.82[EUR][1000 genomes]
rs6706312	1.00[CHB][hapmap]
rs7570985	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573137	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588035	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7588510	0.84[CEU][hapmap]
rs7601013	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs7603617	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs7607354	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs966440	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180655600-180669600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180667600-180668600	Weak transcription	Fetal Brain Male	brain

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