Variant report
| Variant | rs6706312 |
|---|---|
| Chromosome Location | chr2:180670922-180670923 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:180664595..180667266-chr2:180669827..180672570,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10183495 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs10185471 | 1.00[CHB][hapmap] |
| rs10195952 | 1.00[CHB][hapmap] |
| rs13388545 | 1.00[CHB][hapmap] |
| rs13398994 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs13399189 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs13399303 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs13407401 | 1.00[CHB][hapmap] |
| rs13410767 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs13418648 | 1.00[CHB][hapmap] |
| rs1351416 | 1.00[CHB][hapmap] |
| rs1480705 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1480706 | 1.00[CHB][hapmap] |
| rs1480707 | 1.00[CHB][hapmap] |
| rs1486234 | 1.00[CHB][hapmap] |
| rs16867014 | 1.00[CHB][hapmap] |
| rs4894128 | 1.00[CHB][hapmap] |
| rs7570985 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs7573137 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs7588035 | 0.86[ASN][1000 genomes] |
| rs7601013 | 1.00[CHB][hapmap] |
| rs7603617 | 1.00[CHB][hapmap] |
| rs7607354 | 1.00[CHB][hapmap] |
| rs966440 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428731 | chr2:180629389-180805171 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
