Variant report

Variant	rs1906012
Chromosome Location	chr2:180675669-180675670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10153833	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs10183495	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10185471	0.92[CEU][hapmap]
rs10195952	0.92[CEU][hapmap]
rs12328338	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13014793	0.89[JPT][hapmap]
rs13399189	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs13407401	0.92[CEU][hapmap]
rs13410767	0.81[CEU][hapmap]
rs13418648	0.94[YRI][hapmap];0.80[EUR][1000 genomes]
rs1351416	0.92[CEU][hapmap];0.81[YRI][hapmap]
rs1352111	0.80[CHB][hapmap]
rs1480706	0.88[CEU][hapmap]
rs1480707	0.92[CEU][hapmap];0.81[YRI][hapmap]
rs1486233	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs165373	0.91[ASN][1000 genomes]
rs165374	0.92[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs16867045	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2219670	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28520865	0.93[ASN][1000 genomes]
rs357708	0.89[JPT][hapmap]
rs357709	0.89[JPT][hapmap]
rs357712	0.80[CHB][hapmap]
rs55869281	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56152328	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56388438	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6433810	0.92[CEU][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6433811	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6752731	0.92[CHB][hapmap];0.91[ASN][1000 genomes]
rs7557122	0.92[CHB][hapmap];0.93[ASN][1000 genomes]
rs7570985	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7573137	0.92[CEU][hapmap]
rs7585592	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7588510	0.88[CEU][hapmap]
rs7597666	0.92[CHB][hapmap];0.93[ASN][1000 genomes]
rs7601013	0.88[CEU][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs7607354	0.88[CEU][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs7608363	0.89[JPT][hapmap]
rs966440	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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