Variant report

Variant	rs7605645
Chromosome Location	chr2:172091916-172091917
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10211242	0.84[AFR][1000 genomes]
rs13401549	0.86[CEU][hapmap];0.88[YRI][hapmap]
rs13431154	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4667680	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66500332	0.84[EUR][1000 genomes]
rs7583440	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9287943	0.87[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172087800-172092000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:172091800-172092200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:172091800-172092400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:172091800-172092400	Enhancers	K562	blood
5	chr2:172091800-172094200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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