Variant report

Variant	rs13401549
Chromosome Location	chr2:172098281-172098282
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10203533	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10211242	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382769	0.86[YRI][hapmap];0.95[AMR][1000 genomes]
rs13396177	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4667680	0.83[EUR][1000 genomes]
rs4668378	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55686118	0.95[AMR][1000 genomes]
rs55794741	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6710133	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7583440	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7605645	0.86[CEU][hapmap];0.88[YRI][hapmap]
rs9287943	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172094200-172100800	Weak transcription	Placenta	Placenta
2	chr2:172095800-172100600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:172095800-172100800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:172096800-172100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:172098000-172098800	Enhancers	NHEK	skin
7	chr2:172098200-172099000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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