Variant report

Variant	rs55794741
Chromosome Location	chr2:172122882-172122883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10203533	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10211242	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13382769	0.93[AMR][1000 genomes]
rs13396177	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13401549	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668378	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55686118	0.93[AMR][1000 genomes]
rs6710133	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9287943	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172102800-172127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172118600-172124800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:172118800-172127600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:172119000-172124000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:172119000-172124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:172119000-172124400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:172119000-172124400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:172119000-172128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:172119200-172124200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:172119200-172124400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:172119600-172127600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:172122400-172123000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:172122400-172123200	Enhancers	Primary B cells from cord blood	blood
14	chr2:172122400-172123400	Enhancers	Primary B cells from peripheral blood	blood
15	chr2:172122600-172123000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:172122600-172123000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:172122600-172123200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:172122800-172123000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:172122800-172123200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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