Variant report

Variant	rs13396177
Chromosome Location	chr2:172101680-172101681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172064484..172066754-chr2:172100609..172102282,2	K562	blood:
2	chr2:172015533..172017177-chr2:172100533..172102344,2	K562	blood:
3	chr2:172015832..172019269-chr2:172098254..172102314,3	MCF-7	breast:
4	chr2:172017374..172019166-chr2:172101613..172103113,2	K562	blood:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10203533	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10211242	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382769	0.82[AMR][1000 genomes]
rs13401549	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4667680	0.83[EUR][1000 genomes]
rs4668378	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55686118	0.82[AMR][1000 genomes]
rs55794741	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6710133	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7583440	0.83[EUR][1000 genomes]
rs9287943	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:172100600-172102000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:172100600-172102000	Enhancers	K562	blood
4	chr2:172100800-172102000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:172100800-172102000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:172100800-172102200	Enhancers	Placenta	Placenta
7	chr2:172100800-172102200	Enhancers	NHDF-Ad	bronchial
8	chr2:172100800-172102200	Enhancers	Osteobl	bone
9	chr2:172100800-172102800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:172101000-172101800	Enhancers	HSMM	muscle
11	chr2:172101000-172102000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:172101000-172102200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:172101000-172102800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr2:172101000-172103000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr2:172101200-172102400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:172101400-172101800	Enhancers	HepG2	liver
17	chr2:172101400-172102800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr2:172101600-172101800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:172101600-172102000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr2:172101600-172102600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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