Variant report

Variant	rs9287943
Chromosome Location	chr2:172100750-172100751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10203533	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10211242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13382769	0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs13396177	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13401549	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667680	0.83[EUR][1000 genomes]
rs4668378	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55686118	0.93[AMR][1000 genomes]
rs55794741	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6710133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583440	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7605645	0.87[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172094200-172100800	Weak transcription	Placenta	Placenta
2	chr2:172095800-172100800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:172096800-172100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:172098800-172101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:172098800-172101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:172100600-172100800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr2:172100600-172101000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:172100600-172101000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:172100600-172102000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:172100600-172102000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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