Variant report

Variant	rs7615341
Chromosome Location	chr3:69067687-69067688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:69062512-69068459	K562	blood:	n/a	n/a
2	POLR2A	chr3:69067106-69068393	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:69066479..69068502-chr3:69089186..69091697,2	K562	blood:
2	chr3:69066748..69071300-chr3:69073539..69077267,6	K562	blood:
3	chr3:69061468..69064869-chr3:69064964..69069622,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMF1-1	chr3:69066555-69068522	NONHSAT090345

No data

Variant related genes	Relation type
EOGT	TF binding region
ENSG00000163378	Chromatin interaction
ENSG00000244513	Chromatin interaction
ENSG00000144747	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13063094	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13099820	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2009602	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2271120	0.82[EUR][1000 genomes]
rs2271122	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292198	0.81[ASN][1000 genomes]
rs2292199	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35718539	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755717	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755721	0.81[ASN][1000 genomes]
rs3772979	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3821562	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3853157	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56156415	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58950441	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6549162	0.82[EUR][1000 genomes]
rs6549164	0.80[EUR][1000 genomes]
rs6549181	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6775065	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6775256	0.81[ASN][1000 genomes]
rs6777032	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782474	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6787569	0.81[ASN][1000 genomes]
rs6804833	0.80[EUR][1000 genomes]
rs714300	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7426798	0.80[EUR][1000 genomes]
rs7611878	0.80[EUR][1000 genomes]
rs9813514	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9826616	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857898	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69063200-69072800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:69063200-69074000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:69063400-69072600	Weak transcription	Colonic Mucosa	Colon
4	chr3:69063400-69073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:69063400-69073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:69063400-69074000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:69063400-69074000	Weak transcription	Lung	lung
8	chr3:69063400-69074000	Weak transcription	Ovary	ovary
9	chr3:69063400-69074200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:69063400-69078200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:69063400-69078400	Weak transcription	Esophagus	oesophagus
12	chr3:69063400-69078600	Weak transcription	Pancreas	Pancrea
13	chr3:69063400-69078600	Weak transcription	Spleen	Spleen
14	chr3:69063400-69081800	Weak transcription	Gastric	stomach
15	chr3:69063400-69100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:69063600-69069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:69063600-69070400	Weak transcription	Fetal Intestine Large	intestine
18	chr3:69063600-69070600	Weak transcription	Liver	Liver
19	chr3:69063600-69071000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:69063600-69072400	Weak transcription	Adipose Nuclei	Adipose
21	chr3:69063600-69072400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:69063600-69072600	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:69063600-69072800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:69063600-69073600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:69063600-69073600	Weak transcription	Fetal Brain Female	brain
26	chr3:69063600-69073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:69063600-69074000	Weak transcription	Brain Angular Gyrus	brain
28	chr3:69063600-69074000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:69063600-69074000	Weak transcription	Fetal Muscle Leg	muscle
30	chr3:69063600-69074000	Weak transcription	Thymus	Thymus
31	chr3:69063600-69074200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:69063600-69074200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:69063600-69074200	Weak transcription	Fetal Stomach	stomach
34	chr3:69063600-69075400	Weak transcription	Fetal Intestine Small	intestine
35	chr3:69063600-69080800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr3:69063600-69081200	Weak transcription	Small Intestine	intestine
37	chr3:69063800-69068000	Weak transcription	Fetal Lung	lung
38	chr3:69063800-69071000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:69063800-69072200	Weak transcription	Brain Anterior Caudate	brain
40	chr3:69063800-69072200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:69063800-69072600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:69063800-69073600	Weak transcription	Primary T cells from cord blood	blood
43	chr3:69063800-69073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:69063800-69073600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr3:69063800-69073600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:69063800-69073600	Weak transcription	NHLF	lung
47	chr3:69063800-69074000	Weak transcription	Brain Substantia Nigra	brain
48	chr3:69063800-69074000	Weak transcription	HSMMtube	muscle
49	chr3:69063800-69074200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:69063800-69074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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