Variant report

Variant	rs6549164
Chromosome Location	chr3:69039142-69039143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10865642	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11128107	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13085120	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13090606	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271118	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2271120	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2271122	0.84[AMR][1000 genomes]
rs2279936	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2292199	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35132360	0.87[EUR][1000 genomes]
rs35420812	0.88[EUR][1000 genomes]
rs6549162	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6549163	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549165	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549167	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6549169	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6804833	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6807701	0.86[EUR][1000 genomes]
rs7426798	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430692	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7432824	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7433622	0.88[EUR][1000 genomes]
rs7434153	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7611878	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7614090	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7615341	0.80[EUR][1000 genomes]
rs9853259	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9857898	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9873272	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69019600-69061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:69021400-69061600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:69021600-69048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:69023000-69047400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:69023600-69045800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:69023800-69040800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:69023800-69057000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:69024200-69042800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:69024200-69057800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:69024600-69041000	Strong transcription	Osteobl	bone
11	chr3:69024800-69045200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:69024800-69061600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:69024800-69061800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:69025200-69044600	Weak transcription	Fetal Heart	heart
15	chr3:69025200-69047200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:69025200-69058000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:69025200-69062000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:69025400-69040000	Strong transcription	Adipose Nuclei	Adipose
19	chr3:69025400-69057800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:69025600-69045800	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:69028200-69061400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:69030400-69061400	Weak transcription	Stomach Mucosa	stomach
23	chr3:69030800-69043800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:69031600-69043400	Weak transcription	Fetal Intestine Small	intestine
25	chr3:69035200-69046200	Weak transcription	Fetal Brain Male	brain
26	chr3:69036000-69043400	Weak transcription	Fetal Stomach	stomach
27	chr3:69036000-69043800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:69036000-69044000	Weak transcription	Thymus	Thymus
29	chr3:69036200-69044000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:69036200-69044000	Weak transcription	HepG2	liver
31	chr3:69036200-69061200	Weak transcription	Fetal Thymus	thymus
32	chr3:69036200-69061400	Weak transcription	A549	lung
33	chr3:69036400-69040600	Weak transcription	Brain Anterior Caudate	brain
34	chr3:69036400-69041200	Weak transcription	Lung	lung
35	chr3:69036400-69041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:69036400-69042800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:69036400-69061600	Weak transcription	Fetal Kidney	kidney
38	chr3:69036600-69040800	Weak transcription	Gastric	stomach
39	chr3:69036600-69042600	Weak transcription	Esophagus	oesophagus
40	chr3:69036600-69042600	Weak transcription	Spleen	Spleen
41	chr3:69036800-69041600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:69037000-69042200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:69037000-69042800	Weak transcription	Colon Smooth Muscle	Colon
44	chr3:69037000-69042800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr3:69037000-69043800	Weak transcription	Fetal Intestine Large	intestine
46	chr3:69037000-69044000	Weak transcription	Brain Angular Gyrus	brain
47	chr3:69037000-69044200	Weak transcription	Brain Substantia Nigra	brain
48	chr3:69037000-69044600	Weak transcription	K562	blood
49	chr3:69037000-69046200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr3:69037000-69061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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