Variant report

Variant	rs7611878
Chromosome Location	chr3:69048748-69048749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10865642	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11128107	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13072064	0.83[TSI][hapmap]
rs13085120	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13090606	0.88[CEU][hapmap];0.80[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2009602	0.84[TSI][hapmap]
rs2271118	0.90[ASW][hapmap];0.88[CEU][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2271120	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2271122	0.86[TSI][hapmap]
rs2279936	0.88[CEU][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2292199	0.82[CEU][hapmap];0.80[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35132360	0.87[EUR][1000 genomes]
rs35420812	0.86[EUR][1000 genomes]
rs3772979	0.84[TSI][hapmap]
rs3853157	0.86[TSI][hapmap]
rs6549162	0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs6549163	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6549164	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6549165	0.81[ASW][hapmap];0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6549167	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6549169	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6549181	0.89[TSI][hapmap]
rs6782474	0.89[CEU][hapmap];0.80[CHB][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs6804833	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6807701	0.86[EUR][1000 genomes]
rs7426798	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7430692	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7432824	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7433622	0.87[EUR][1000 genomes]
rs7434153	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7614090	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7615341	0.80[EUR][1000 genomes]
rs9853259	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9857898	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9873272	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69019600-69061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:69021400-69061600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:69023800-69057000	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:69024200-69057800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:69024800-69061600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:69024800-69061800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:69025200-69058000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:69025200-69062000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:69025400-69057800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:69028200-69061400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:69030400-69061400	Weak transcription	Stomach Mucosa	stomach
12	chr3:69036200-69061200	Weak transcription	Fetal Thymus	thymus
13	chr3:69036200-69061400	Weak transcription	A549	lung
14	chr3:69036400-69061600	Weak transcription	Fetal Kidney	kidney
15	chr3:69037000-69061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:69037000-69061600	Weak transcription	GM12878-XiMat	blood
17	chr3:69037000-69062000	Weak transcription	Primary T cells from cord blood	blood
18	chr3:69037000-69062200	Weak transcription	Small Intestine	intestine
19	chr3:69037600-69062000	Weak transcription	Primary B cells from cord blood	blood
20	chr3:69039600-69056400	Strong transcription	HUVEC	blood vessel
21	chr3:69039600-69056800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:69039800-69057600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:69040000-69057200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:69040600-69060400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:69040800-69049400	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:69041200-69049400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr3:69042200-69049200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:69042400-69062000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr3:69042600-69058000	Strong transcription	Adipose Nuclei	Adipose
30	chr3:69042800-69054400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:69043000-69052000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:69043200-69051600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:69044000-69049000	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:69044400-69057600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:69044600-69052600	Weak transcription	NHDF-Ad	bronchial
36	chr3:69044800-69058000	Weak transcription	HepG2	liver
37	chr3:69045200-69052800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:69045200-69058800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:69045600-69048800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:69045600-69055800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr3:69045800-69051800	Weak transcription	Thymus	Thymus
42	chr3:69045800-69054400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:69046000-69049800	Strong transcription	Left Ventricle	heart
44	chr3:69046000-69050800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:69046000-69051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:69046000-69052200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:69046000-69053400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:69046000-69055400	Weak transcription	Fetal Intestine Small	intestine
49	chr3:69046200-69049200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:69046400-69058000	Weak transcription	Right Atrium	heart

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