Variant report

Variant	rs13085120
Chromosome Location	chr3:69038088-69038089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr3:69037768-69038426	SK-N-SH	brain:	n/a	n/a
2	FOSL2	chr3:69037830-69038257	SK-N-SH	brain:	n/a	n/a
3	FOS	chr3:69037908-69038247	HUVEC	blood vessel:	n/a	chr3:69038018-69038029
4	TCF12	chr3:69037875-69038325	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69037046..69038938-chr3:69061322..69064062,2	K562	blood:

Variant related genes	Relation type
EOGT	TF binding region
ENSG00000244513	Chromatin interaction
ENSG00000163378	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10865642	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128107	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13090606	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2271118	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2271120	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2279936	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2292199	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35132360	0.85[EUR][1000 genomes]
rs35420812	0.86[EUR][1000 genomes]
rs3772977	0.86[ASN][1000 genomes]
rs6549162	0.93[EUR][1000 genomes]
rs6549163	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6549164	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6549165	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6549167	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6549169	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6804833	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6807701	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7426798	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7430692	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7432824	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7433622	0.87[EUR][1000 genomes]
rs7434153	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7611878	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7614090	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9853259	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9857898	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9873272	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69019600-69061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:69021400-69061600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:69021600-69048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:69023000-69047400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:69023400-69038800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:69023600-69045800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:69023800-69040800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:69023800-69057000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:69024200-69042800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:69024200-69057800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:69024400-69038600	Strong transcription	HMEC	breast
12	chr3:69024400-69038800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:69024600-69041000	Strong transcription	Osteobl	bone
14	chr3:69024800-69038600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:69024800-69045200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:69024800-69061600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:69024800-69061800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:69025200-69038400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:69025200-69038400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:69025200-69038400	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:69025200-69044600	Weak transcription	Fetal Heart	heart
22	chr3:69025200-69047200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:69025200-69058000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:69025200-69062000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr3:69025400-69038200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:69025400-69038400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr3:69025400-69040000	Strong transcription	Adipose Nuclei	Adipose
28	chr3:69025400-69057800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:69025600-69038400	Strong transcription	NH-A	brain
30	chr3:69025600-69045800	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:69026000-69038600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:69026800-69038200	Strong transcription	HSMM	muscle
33	chr3:69028200-69061400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:69030400-69038400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:69030400-69061400	Weak transcription	Stomach Mucosa	stomach
36	chr3:69030800-69043800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:69031600-69043400	Weak transcription	Fetal Intestine Small	intestine
38	chr3:69033200-69038200	Strong transcription	Placenta	Placenta
39	chr3:69033400-69038200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr3:69033800-69038200	Strong transcription	NHDF-Ad	bronchial
41	chr3:69033800-69038400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr3:69034000-69038400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:69035200-69046200	Weak transcription	Fetal Brain Male	brain
44	chr3:69035400-69038800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:69035600-69038200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr3:69036000-69043400	Weak transcription	Fetal Stomach	stomach
47	chr3:69036000-69043800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:69036000-69044000	Weak transcription	Thymus	Thymus
49	chr3:69036200-69044000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:69036200-69044000	Weak transcription	HepG2	liver

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