Variant report

Variant	rs6549169
Chromosome Location	chr3:69044784-69044785
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10865642	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128107	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13085120	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13090606	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2271118	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271120	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2271122	0.80[AMR][1000 genomes]
rs2279936	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2292199	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35132360	0.85[EUR][1000 genomes]
rs35420812	0.84[EUR][1000 genomes]
rs6549162	0.91[EUR][1000 genomes]
rs6549163	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6549164	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6549165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6549167	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6782474	0.81[ASN][1000 genomes]
rs6804833	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807701	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7426798	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7430692	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7433622	0.85[EUR][1000 genomes]
rs7434153	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611878	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7614090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9853259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9857898	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9873272	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369576	chr3:69044262-69047360	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69019600-69061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:69021400-69061600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:69021600-69048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:69023000-69047400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:69023600-69045800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:69023800-69057000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:69024200-69057800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:69024800-69045200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:69024800-69061600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:69024800-69061800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:69025200-69047200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:69025200-69058000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:69025200-69062000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:69025400-69057800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:69025600-69045800	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:69028200-69061400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:69030400-69061400	Weak transcription	Stomach Mucosa	stomach
18	chr3:69035200-69046200	Weak transcription	Fetal Brain Male	brain
19	chr3:69036200-69061200	Weak transcription	Fetal Thymus	thymus
20	chr3:69036200-69061400	Weak transcription	A549	lung
21	chr3:69036400-69061600	Weak transcription	Fetal Kidney	kidney
22	chr3:69037000-69046200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:69037000-69061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:69037000-69061600	Weak transcription	GM12878-XiMat	blood
25	chr3:69037000-69062000	Weak transcription	Primary T cells from cord blood	blood
26	chr3:69037000-69062200	Weak transcription	Small Intestine	intestine
27	chr3:69037200-69048400	Weak transcription	Psoas Muscle	Psoas
28	chr3:69037600-69062000	Weak transcription	Primary B cells from cord blood	blood
29	chr3:69039000-69045600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:69039400-69045600	Strong transcription	Left Ventricle	heart
31	chr3:69039600-69048200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:69039600-69048200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:69039600-69056400	Strong transcription	HUVEC	blood vessel
34	chr3:69039600-69056800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:69039800-69057600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:69040000-69045600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:69040000-69057200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr3:69040400-69045600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr3:69040600-69045000	Strong transcription	Brain Anterior Caudate	brain
40	chr3:69040600-69045200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:69040600-69047000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:69040600-69060400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:69040800-69045000	Strong transcription	Right Ventricle	heart
44	chr3:69040800-69047200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:69040800-69047400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:69040800-69049400	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:69041200-69046000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:69041200-69047800	Strong transcription	Lung	lung
49	chr3:69041200-69049400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr3:69041400-69044800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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