Variant report

Variant	rs7620319
Chromosome Location	chr3:142427809-142427810
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142296287..142298547-chr3:142424525..142428027,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175054	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs13324817	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1479135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1479138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2199714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28539899	1.00[ASN][1000 genomes]
rs34502778	1.00[EUR][1000 genomes]
rs35582603	1.00[EUR][1000 genomes]
rs35978765	1.00[EUR][1000 genomes]
rs55764539	1.00[ASN][1000 genomes]
rs55820583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55895932	1.00[EUR][1000 genomes]
rs56022646	1.00[EUR][1000 genomes]
rs56050554	1.00[EUR][1000 genomes]
rs56062708	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56921402	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57014591	1.00[ASN][1000 genomes]
rs57625476	1.00[EUR][1000 genomes]
rs57792207	0.86[ASN][1000 genomes]
rs58421597	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58980616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59456283	1.00[EUR][1000 genomes]
rs59936227	1.00[EUR][1000 genomes]
rs60399161	1.00[EUR][1000 genomes]
rs60403314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60701561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61300208	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61326325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440101	1.00[EUR][1000 genomes]
rs6765644	1.00[EUR][1000 genomes]
rs6768384	1.00[EUR][1000 genomes]
rs6768692	1.00[ASN][1000 genomes]
rs6770411	1.00[EUR][1000 genomes]
rs6775426	1.00[ASN][1000 genomes]
rs6777735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778183	1.00[ASN][1000 genomes]
rs6781412	1.00[EUR][1000 genomes]
rs6783167	1.00[ASN][1000 genomes]
rs6791858	1.00[EUR][1000 genomes]
rs6798670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988608	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988609	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72990712	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72990731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72990738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72990743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992635	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992638	1.00[EUR][1000 genomes]
rs72992653	1.00[EUR][1000 genomes]
rs73002081	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003968	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73003973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73864409	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73864413	1.00[EUR][1000 genomes]
rs73864431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7431811	1.00[ASN][1000 genomes]
rs7613884	1.00[EUR][1000 genomes]
rs7615480	1.00[EUR][1000 genomes]
rs7620068	1.00[EUR][1000 genomes]
rs7621810	1.00[EUR][1000 genomes]
rs7622266	1.00[EUR][1000 genomes]
rs7623858	1.00[ASN][1000 genomes]
rs7625306	1.00[EUR][1000 genomes]
rs7625764	1.00[EUR][1000 genomes]
rs7628187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7628677	1.00[EUR][1000 genomes]
rs7630817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7653387	1.00[EUR][1000 genomes]
rs9815050	1.00[ASN][1000 genomes]
rs9821817	1.00[ASN][1000 genomes]
rs9824559	1.00[ASN][1000 genomes]
rs9829403	1.00[ASN][1000 genomes]
rs9835086	1.00[ASN][1000 genomes]
rs9837730	1.00[JPT][hapmap]
rs9846817	1.00[ASN][1000 genomes]
rs9867946	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv520533	chr3:142417070-142440299	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv518623	chr3:142417070-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142389800-142442400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:142392800-142433000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:142408800-142430400	Weak transcription	Liver	Liver
5	chr3:142424600-142430200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:142425800-142431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:142426200-142435000	Weak transcription	Fetal Intestine Large	intestine
8	chr3:142427000-142430600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:142427000-142430600	Weak transcription	Rectal Mucosa Donor 31	rectum

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