Variant report

Variant	rs76264678
Chromosome Location	chr11:51569848-51569849
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4C46-2	chr11:51569667-51570142	NONHSAT021350

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897575	chr11:50730482-51579085	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv554427	chr11:51095992-51580203	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv897582	chr11:51127089-51579085	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv554434	chr11:51183814-51593877	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv554440	chr11:51187354-51578097	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv554587	chr11:51362490-51581931	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv554588	chr11:51365437-51582380	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv554589	chr11:51365437-51593877	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv554591	chr11:51372036-51591253	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv975109	chr11:51484171-51594205	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv4734	chr11:51567297-51591315	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv8155	chr11:51567298-51572171	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv8625	chr11:51567302-51581127	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv12298	chr11:51567562-51594097	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv5806	chr11:51569669-51580974	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv6732	chr11:51569688-51579497	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51567200-51570000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:51567200-51570200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:51567200-51570200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:51567200-51570200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:51567200-51570200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr11:51567200-51570200	ZNF genes & repeats	Brain Angular Gyrus	brain
7	chr11:51567200-51570200	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr11:51567200-51570200	ZNF genes & repeats	Left Ventricle	heart
9	chr11:51567200-51570200	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr11:51567200-51570200	ZNF genes & repeats	Small Intestine	intestine
11	chr11:51567200-51570200	ZNF genes & repeats	HepG2	liver
12	chr11:51567200-51570400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr11:51567200-51570400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:51567200-51570400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:51567200-51570400	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr11:51567200-51570400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr11:51567200-51570400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:51567200-51570400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
19	chr11:51567200-51570400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
20	chr11:51567200-51570400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr11:51567200-51570600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr11:51567200-51573600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
23	chr11:51567200-51573600	ZNF genes & repeats	Liver	Liver
24	chr11:51567200-51573800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr11:51567200-51575800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:51567200-51576400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:51567200-51576600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr11:51567200-51581200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
29	chr11:51567200-51581200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:51567200-51581200	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr11:51567200-51581400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:51567200-51583200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr11:51567200-51584000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:51567200-51584000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr11:51567200-51584200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr11:51567200-51584400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr11:51568200-51570200	ZNF genes & repeats	NH-A	brain
40	chr11:51568400-51570200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:51568400-51570200	ZNF genes & repeats	Hela-S3	cervix
42	chr11:51568400-51570400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr11:51568400-51570400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
44	chr11:51569000-51570200	ZNF genes & repeats	Gastric	stomach
45	chr11:51569000-51573600	ZNF genes & repeats	Fetal Stomach	stomach
46	chr11:51569200-51570200	ZNF genes & repeats	Fetal Heart	heart
47	chr11:51569400-51570200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
48	chr11:51569400-51570400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr11:51569400-51570400	ZNF genes & repeats	Dnd41	blood
50	chr11:51569400-51570400	ZNF genes & repeats	HUVEC	blood vessel

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