Variant report

Variant	rs7627121
Chromosome Location	chr3:69308958-69308959
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2170801	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6549191	0.84[AFR][1000 genomes]
rs9841198	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69293000-69343400	Weak transcription	HSMM	muscle
2	chr3:69293400-69339200	Weak transcription	Aorta	Aorta
3	chr3:69296600-69310400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:69298000-69329600	Weak transcription	Dnd41	blood
5	chr3:69299200-69309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:69299400-69309200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:69299400-69331400	Weak transcription	HUVEC	blood vessel
8	chr3:69299600-69309200	Weak transcription	Lung	lung
9	chr3:69299600-69320600	Weak transcription	Brain Substantia Nigra	brain
10	chr3:69301600-69309000	Weak transcription	Placenta	Placenta
11	chr3:69302600-69322800	Weak transcription	HMEC	breast
12	chr3:69302600-69322800	Weak transcription	NHEK	skin
13	chr3:69302800-69322800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:69303200-69309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:69305600-69309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69306000-69309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:69306000-69310000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:69306000-69310200	Weak transcription	Liver	Liver
19	chr3:69306000-69320400	Weak transcription	Brain Angular Gyrus	brain
20	chr3:69306200-69320200	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:69307600-69309000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:69308400-69309200	Strong transcription	Fetal Lung	lung
23	chr3:69308400-69312200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:69308600-69314800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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