Variant report

Variant	rs7639659
Chromosome Location	chr3:144428012-144428013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1512781	0.88[EUR][1000 genomes]
rs16855936	0.83[EUR][1000 genomes]
rs16855937	0.83[EUR][1000 genomes]
rs16855943	1.00[CHB][hapmap]
rs16855955	1.00[CHB][hapmap]
rs1916250	0.83[EUR][1000 genomes]
rs1916251	1.00[CHB][hapmap]
rs59664363	0.83[EUR][1000 genomes]
rs6790749	0.83[EUR][1000 genomes]
rs6791002	0.83[EUR][1000 genomes]
rs6791012	0.83[EUR][1000 genomes]
rs73873579	0.88[EUR][1000 genomes]
rs7611272	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs7635998	0.83[EUR][1000 genomes]
rs7641244	0.83[EUR][1000 genomes]
rs7651550	1.00[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144427000-144428200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:144427000-144428400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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