Variant report

Variant	rs16855943
Chromosome Location	chr3:144489536-144489537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143690596..143692811-chr3:144488722..144490239,2	MCF-7	breast:
2	chr3:143689459..143691462-chr3:144489230..144491259,2	MCF-7	breast:
3	chr3:144406468..144407248-chr3:144489335..144490305,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1512781	0.91[ASN][1000 genomes]
rs16855936	1.00[ASN][1000 genomes]
rs16855937	1.00[ASN][1000 genomes]
rs16855941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16855946	0.90[JPT][hapmap];0.95[EUR][1000 genomes]
rs16855950	1.00[ASN][1000 genomes]
rs16855955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916250	0.98[ASN][1000 genomes]
rs1916251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56380437	1.00[ASN][1000 genomes]
rs56807652	1.00[ASN][1000 genomes]
rs59664363	0.94[ASN][1000 genomes]
rs60322313	0.91[ASN][1000 genomes]
rs60535604	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60705164	0.91[ASN][1000 genomes]
rs61400914	0.91[ASN][1000 genomes]
rs61429069	0.91[ASN][1000 genomes]
rs61465948	0.91[ASN][1000 genomes]
rs6440267	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771295	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6782105	0.91[ASN][1000 genomes]
rs6790055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790749	1.00[ASN][1000 genomes]
rs6791002	1.00[ASN][1000 genomes]
rs6791012	1.00[ASN][1000 genomes]
rs6793649	0.91[ASN][1000 genomes]
rs6803084	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008056	0.91[ASN][1000 genomes]
rs7340591	0.91[ASN][1000 genomes]
rs73873579	0.98[ASN][1000 genomes]
rs7611272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7615860	1.00[ASN][1000 genomes]
rs7620613	0.95[EUR][1000 genomes]
rs7630559	0.91[ASN][1000 genomes]
rs7635998	0.95[ASN][1000 genomes]
rs7636179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7636248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7641230	0.98[ASN][1000 genomes]
rs7641244	0.98[ASN][1000 genomes]
rs7641516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7644542	0.89[JPT][hapmap];0.95[EUR][1000 genomes]
rs7646035	0.91[ASN][1000 genomes]
rs7651550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv999196	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv536755	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144487800-144492200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:144488000-144491000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:144489000-144489600	Enhancers	HSMM	muscle
4	chr3:144489000-144490400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:144489000-144491000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:144489000-144491000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:144489200-144489600	Enhancers	NHDF-Ad	bronchial
8	chr3:144489200-144491000	Enhancers	HSMMtube	muscle
9	chr3:144489200-144491400	Enhancers	Brain Angular Gyrus	brain
10	chr3:144489200-144491400	Enhancers	Brain Anterior Caudate	brain
11	chr3:144489200-144491600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:144489200-144491600	Enhancers	Brain Hippocampus Middle	brain
13	chr3:144489200-144492400	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:144489400-144489800	Flanking Active TSS	HUVEC	blood vessel
15	chr3:144489400-144490000	Enhancers	Fetal Kidney	kidney
16	chr3:144489400-144490000	Weak transcription	Psoas Muscle	Psoas
17	chr3:144489400-144490400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:144489400-144491600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:144489400-144491600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:144489400-144492200	Enhancers	Brain Substantia Nigra	brain
21	chr3:144489400-144492200	Enhancers	Fetal Heart	heart

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