Variant report

Variant	rs7340591
Chromosome Location	chr3:144473747-144473748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1512781	1.00[ASN][1000 genomes]
rs16855936	0.91[ASN][1000 genomes]
rs16855937	0.91[ASN][1000 genomes]
rs16855941	0.94[ASN][1000 genomes]
rs16855943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16855946	0.91[JPT][hapmap]
rs16855950	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16855955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1916250	0.89[ASN][1000 genomes]
rs1916251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs56380437	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56807652	0.91[ASN][1000 genomes]
rs57089429	0.89[AFR][1000 genomes]
rs59664363	0.97[ASN][1000 genomes]
rs60322313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60535604	0.89[ASN][1000 genomes]
rs60705164	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61400914	1.00[ASN][1000 genomes]
rs61429069	1.00[ASN][1000 genomes]
rs61465948	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6440267	1.00[ASN][1000 genomes]
rs6771295	1.00[ASN][1000 genomes]
rs6782105	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790055	0.91[ASN][1000 genomes]
rs6790749	0.91[ASN][1000 genomes]
rs6791002	0.91[ASN][1000 genomes]
rs6791012	0.91[ASN][1000 genomes]
rs6793649	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6803084	0.91[ASN][1000 genomes]
rs73006065	0.85[AFR][1000 genomes]
rs73008056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873579	0.89[ASN][1000 genomes]
rs7611272	0.92[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7615860	0.91[ASN][1000 genomes]
rs7630559	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7635998	0.95[ASN][1000 genomes]
rs7636179	0.95[ASN][1000 genomes]
rs7636248	0.95[ASN][1000 genomes]
rs7641230	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7641244	0.89[ASN][1000 genomes]
rs7641516	0.89[ASN][1000 genomes]
rs7644542	0.90[JPT][hapmap]
rs7646035	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7648002	0.89[AFR][1000 genomes]
rs7651550	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144469800-144475600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:144472800-144474200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:144473200-144474000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:144473600-144475600	Weak transcription	Gastric	stomach

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