Variant report

Variant	rs7630559
Chromosome Location	chr3:144479727-144479728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1512781	1.00[ASN][1000 genomes]
rs16855936	0.91[ASN][1000 genomes]
rs16855937	0.91[ASN][1000 genomes]
rs16855941	0.94[ASN][1000 genomes]
rs16855943	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs16855946	0.83[JPT][hapmap]
rs16855950	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16855955	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1916250	0.89[ASN][1000 genomes]
rs1916251	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs56380437	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56807652	0.91[ASN][1000 genomes]
rs57089429	0.82[AFR][1000 genomes]
rs59664363	0.97[ASN][1000 genomes]
rs60322313	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60535604	0.89[ASN][1000 genomes]
rs60705164	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61400914	1.00[ASN][1000 genomes]
rs61429069	1.00[ASN][1000 genomes]
rs61465948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440267	1.00[ASN][1000 genomes]
rs6771295	1.00[ASN][1000 genomes]
rs6782105	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6790055	0.91[ASN][1000 genomes]
rs6790749	0.91[ASN][1000 genomes]
rs6791002	0.91[ASN][1000 genomes]
rs6791012	0.91[ASN][1000 genomes]
rs6793649	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6803084	0.91[ASN][1000 genomes]
rs73008056	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7340591	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73873579	0.89[ASN][1000 genomes]
rs7611272	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7615860	0.91[ASN][1000 genomes]
rs7635998	0.95[ASN][1000 genomes]
rs7636179	0.95[ASN][1000 genomes]
rs7636248	0.95[ASN][1000 genomes]
rs7641230	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7641244	0.89[ASN][1000 genomes]
rs7641516	0.89[ASN][1000 genomes]
rs7644542	0.81[JPT][hapmap]
rs7646035	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648002	0.82[AFR][1000 genomes]
rs7651550	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144476400-144482800	Weak transcription	Aorta	Aorta
2	chr3:144479200-144480000	Enhancers	Fetal Heart	heart
3	chr3:144479600-144480200	Enhancers	Fetal Lung	lung

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