Variant report

Variant	rs7611272
Chromosome Location	chr3:144486315-144486316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143689621..143691420-chr3:144483860..144486695,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1512781	0.97[ASN][1000 genomes]
rs16855936	0.94[ASN][1000 genomes]
rs16855937	0.94[ASN][1000 genomes]
rs16855941	0.97[ASN][1000 genomes]
rs16855943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16855946	0.91[JPT][hapmap]
rs16855950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16855955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1916250	0.92[ASN][1000 genomes]
rs1916251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs56380437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56807652	0.94[ASN][1000 genomes]
rs59664363	1.00[ASN][1000 genomes]
rs60322313	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60535604	0.92[ASN][1000 genomes]
rs60705164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61400914	0.97[ASN][1000 genomes]
rs61429069	0.97[ASN][1000 genomes]
rs61465948	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6440267	0.97[ASN][1000 genomes]
rs6771295	0.97[ASN][1000 genomes]
rs6782105	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6790055	0.94[ASN][1000 genomes]
rs6790749	0.94[ASN][1000 genomes]
rs6791002	0.94[ASN][1000 genomes]
rs6791012	0.94[ASN][1000 genomes]
rs6793649	0.97[ASN][1000 genomes]
rs6803084	0.94[ASN][1000 genomes]
rs73008056	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7340591	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73873579	0.92[ASN][1000 genomes]
rs7615860	0.94[ASN][1000 genomes]
rs7630559	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7635998	0.98[ASN][1000 genomes]
rs7636179	0.98[ASN][1000 genomes]
rs7636248	0.98[ASN][1000 genomes]
rs7641230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7641244	0.92[ASN][1000 genomes]
rs7641516	0.92[ASN][1000 genomes]
rs7644542	0.90[JPT][hapmap]
rs7646035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7651550	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv275317	chr3:144482382-144486520	Weak transcription Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7611272	ZFYVE19	trans	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144483200-144489200	Weak transcription	Psoas Muscle	Psoas
2	chr3:144483400-144487800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:144483400-144489000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:144483400-144489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:144483400-144489200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:144483400-144489400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:144483600-144489400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:144483800-144488000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:144484000-144489200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:144485600-144489200	Weak transcription	Brain Cingulate Gyrus	brain

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