Variant report

Variant	rs7640429
Chromosome Location	chr3:159567428-159567429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159560375..159562588-chr3:159564406..159567889,4	K562	blood:

rs_ID	r²[population]
rs11928736	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441272	0.87[CEU][hapmap]
rs6792870	0.81[CHD][hapmap]
rs7631400	0.83[CHD][hapmap]
rs9860588	0.84[CHB][hapmap]
rs9880487	0.81[CHD][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs7640429	MFSD1	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
3	chr3:159558000-159575000	Weak transcription	Gastric	stomach
4	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:159559000-159569400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:159559000-159570600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:159560400-159569200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:159560600-159568400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:159561800-159570400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:159561800-159570400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:159562400-159570400	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:159562600-159569400	Enhancers	Brain Angular Gyrus	brain
13	chr3:159562800-159570000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:159563000-159567600	Enhancers	Brain Hippocampus Middle	brain
15	chr3:159563000-159569000	Weak transcription	Fetal Brain Male	brain
16	chr3:159563000-159569600	Weak transcription	Small Intestine	intestine
17	chr3:159563000-159570600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:159563200-159569400	Enhancers	Brain Anterior Caudate	brain
19	chr3:159563800-159568400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:159563800-159569200	Weak transcription	NH-A	brain
21	chr3:159563800-159569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:159563800-159570400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:159563800-159570400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:159563800-159570400	Weak transcription	Aorta	Aorta
25	chr3:159563800-159570800	Weak transcription	Esophagus	oesophagus
26	chr3:159564000-159568400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:159564000-159569000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:159564000-159569800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:159564200-159569000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:159564200-159569400	Weak transcription	Fetal Brain Female	brain
31	chr3:159564400-159568600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:159564400-159569000	Weak transcription	Liver	Liver
33	chr3:159564400-159569200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:159564400-159569400	Weak transcription	NHEK	skin
35	chr3:159565200-159567600	Enhancers	Fetal Muscle Leg	muscle
36	chr3:159565200-159568000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr3:159565200-159568200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:159565200-159569400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:159565400-159567600	Enhancers	Rectal Smooth Muscle	rectum
40	chr3:159565400-159568800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr3:159565400-159569200	Weak transcription	HMEC	breast
42	chr3:159565600-159568000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:159565600-159569200	Weak transcription	NHDF-Ad	bronchial
44	chr3:159565800-159570400	Enhancers	Fetal Heart	heart
45	chr3:159566000-159568000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr3:159566000-159569000	Weak transcription	Fetal Kidney	kidney
47	chr3:159566000-159570400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:159566200-159567800	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr3:159566200-159568400	Weak transcription	HUVEC	blood vessel
50	chr3:159566200-159568800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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