Variant report

Variant	rs9860588
Chromosome Location	chr3:159521179-159521180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11920991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13064339	0.85[CEU][hapmap]
rs13065938	0.85[CEU][hapmap]
rs13066040	0.93[CEU][hapmap]
rs13066560	0.85[CEU][hapmap]
rs13067050	0.83[CEU][hapmap]
rs13075534	0.85[CEU][hapmap]
rs13077427	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs13078322	0.85[CEU][hapmap]
rs13100094	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs13100614	0.85[CEU][hapmap]
rs1553080	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16830748	0.85[CEU][hapmap]
rs16830780	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[EUR][1000 genomes]
rs2076889	0.85[CEU][hapmap]
rs2126142	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs2366405	0.92[CEU][hapmap]
rs62270390	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792870	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7631400	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7640429	0.84[CHB][hapmap]
rs9880487	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9884085	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
3	chr3:159506400-159522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:159513400-159522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:159513400-159523600	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:159515800-159522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:159516000-159522800	Weak transcription	Aorta	Aorta
8	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:159516400-159522400	Enhancers	Osteobl	bone
10	chr3:159517000-159522400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:159517200-159522000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:159517200-159522200	Weak transcription	HSMMtube	muscle
13	chr3:159517200-159522400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:159517200-159523200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:159517200-159524000	Weak transcription	Liver	Liver
16	chr3:159517400-159522200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:159517600-159522400	Weak transcription	Right Ventricle	heart
18	chr3:159517600-159522600	Weak transcription	Adipose Nuclei	Adipose
19	chr3:159517600-159523200	Weak transcription	Placenta	Placenta
20	chr3:159517600-159524200	Weak transcription	NHEK	skin
21	chr3:159517800-159522600	Weak transcription	HMEC	breast
22	chr3:159518000-159524400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:159518200-159522200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:159518200-159522800	Weak transcription	Fetal Intestine Small	intestine
25	chr3:159518200-159522800	Weak transcription	Lung	lung
26	chr3:159518400-159522400	Weak transcription	Right Atrium	heart
27	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:159518600-159521200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:159518600-159522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:159518600-159522400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:159518600-159522400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr3:159518600-159523000	Enhancers	Fetal Heart	heart
33	chr3:159518800-159522600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:159518800-159524400	Weak transcription	Left Ventricle	heart
35	chr3:159518800-159531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:159519000-159521200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:159519000-159521200	Weak transcription	A549	lung
38	chr3:159519000-159522600	Weak transcription	NHDF-Ad	bronchial
39	chr3:159520000-159526200	Enhancers	Brain Substantia Nigra	brain
40	chr3:159520000-159526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr3:159520200-159522400	Enhancers	Brain Hippocampus Middle	brain
42	chr3:159520200-159523200	Enhancers	HUVEC	blood vessel
43	chr3:159520400-159521600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:159520400-159522400	Enhancers	Stomach Smooth Muscle	stomach
45	chr3:159520400-159523400	Enhancers	NH-A	brain
46	chr3:159520600-159521200	Enhancers	Colon Smooth Muscle	Colon
47	chr3:159520600-159521600	Enhancers	Fetal Stomach	stomach
48	chr3:159520600-159521800	Weak transcription	Brain Angular Gyrus	brain
49	chr3:159520600-159521800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:159520600-159522000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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