Variant report

Variant	rs2076889
Chromosome Location	chr3:159524921-159524922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159479968..159483823-chr3:159521256..159524933,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12629172	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12631468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13064339	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13065938	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13065987	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13066560	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13067050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13072356	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13075534	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13077427	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs13078322	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13080307	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13080768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13085339	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13088481	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13088959	0.91[CEU][hapmap];0.91[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13100094	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs13100614	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16830741	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16830748	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16830780	0.86[CEU][hapmap]
rs2126142	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs34682429	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35035161	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35165740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35527279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35792854	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3892994	0.92[CEU][hapmap];0.82[CHB][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56077320	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58755984	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61597037	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6441272	0.81[CHB][hapmap]
rs6792870	0.85[CEU][hapmap]
rs71625413	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7631400	1.00[ASW][hapmap];0.85[CEU][hapmap];0.90[TSI][hapmap]
rs9860588	0.85[CEU][hapmap]
rs9880487	0.85[CEU][hapmap]
rs9884085	0.85[CEU][hapmap]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159518800-159531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159520000-159526200	Enhancers	Brain Substantia Nigra	brain
4	chr3:159520000-159526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:159521600-159526200	Weak transcription	Fetal Stomach	stomach
6	chr3:159521800-159525800	Enhancers	Brain Angular Gyrus	brain
7	chr3:159521800-159525800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:159521800-159526600	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:159522200-159525800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:159522400-159525000	Enhancers	NHLF	lung
11	chr3:159522400-159525800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr3:159522400-159526800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:159522600-159525600	Enhancers	HMEC	breast
14	chr3:159522600-159525800	Enhancers	NHDF-Ad	bronchial
15	chr3:159522600-159526600	Enhancers	Adipose Nuclei	Adipose
16	chr3:159522800-159525200	Enhancers	HSMM	muscle
17	chr3:159522800-159526400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:159523000-159525800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:159523000-159526200	Enhancers	Brain Hippocampus Middle	brain
20	chr3:159523000-159526400	Enhancers	Colon Smooth Muscle	Colon
21	chr3:159523000-159531800	Weak transcription	Right Atrium	heart
22	chr3:159523000-159536200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:159523400-159531600	Weak transcription	A549	lung
24	chr3:159523400-159532000	Weak transcription	Stomach Mucosa	stomach
25	chr3:159523400-159533000	Weak transcription	Osteobl	bone
26	chr3:159523400-159537800	Weak transcription	NH-A	brain
27	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
28	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:159523600-159526400	Enhancers	Stomach Smooth Muscle	stomach
30	chr3:159523800-159525800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:159524000-159525000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:159524000-159525200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr3:159524000-159526400	Enhancers	Rectal Smooth Muscle	rectum
34	chr3:159524000-159526600	Enhancers	Fetal Muscle Leg	muscle
35	chr3:159524200-159525000	Weak transcription	HSMMtube	muscle
36	chr3:159524200-159525800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:159524200-159525800	Enhancers	NHEK	skin
38	chr3:159524200-159526800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:159524200-159531800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:159524400-159525200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:159524400-159525200	Enhancers	Ovary	ovary
42	chr3:159524400-159525800	Enhancers	Brain Anterior Caudate	brain
43	chr3:159524400-159525800	Enhancers	Left Ventricle	heart
44	chr3:159524600-159525000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:159524600-159525200	Weak transcription	Fetal Lung	lung
46	chr3:159524600-159525800	Weak transcription	Right Ventricle	heart
47	chr3:159524600-159531400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:159524600-159535800	Weak transcription	Aorta	Aorta
49	chr3:159524600-159538600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:159524800-159526200	Weak transcription	Liver	Liver

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