Variant report

Variant	rs61597037
Chromosome Location	chr3:159484168-159484169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12629172	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12631468	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13064339	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13065938	0.97[AMR][1000 genomes]
rs13065987	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13066560	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13067050	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13072356	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078322	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13080307	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13080768	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085339	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13088481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088959	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13100614	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16830741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16830748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076889	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34586932	0.92[ASN][1000 genomes]
rs34682429	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35035161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35165740	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35527279	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35792854	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3892994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680522	0.91[ASN][1000 genomes]
rs56077320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58755984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441272	0.93[ASN][1000 genomes]
rs71625413	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335783	chr3:159480158-159484256	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159480400-159484200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:159480600-159485400	Active TSS	Aorta	Aorta
3	chr3:159480800-159484600	Active TSS	Colon Smooth Muscle	Colon
4	chr3:159480800-159485000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:159480800-159485000	Active TSS	Fetal Kidney	kidney
6	chr3:159480800-159485200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr3:159481000-159484200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:159481000-159484200	Active TSS	NHDF-Ad	bronchial
9	chr3:159481000-159484400	Active TSS	Brain Angular Gyrus	brain
10	chr3:159481000-159484400	Active TSS	Right Atrium	heart
11	chr3:159481000-159485400	Active TSS	Brain Hippocampus Middle	brain
12	chr3:159481000-159485400	Active TSS	Right Ventricle	heart
13	chr3:159481200-159484200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:159481200-159484200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:159481200-159484200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:159481200-159484600	Active TSS	Stomach Smooth Muscle	stomach
17	chr3:159481200-159484800	Active TSS	HSMM	muscle
18	chr3:159481200-159484800	Active TSS	HSMMtube	muscle
19	chr3:159481200-159485000	Active TSS	Brain Anterior Caudate	brain
20	chr3:159481200-159485000	Active TSS	Brain Cingulate Gyrus	brain
21	chr3:159482200-159484200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr3:159482400-159484200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr3:159482800-159484200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
24	chr3:159483000-159484200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:159483000-159484600	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr3:159483200-159484200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:159483200-159484200	Flanking Active TSS	Placenta	Placenta
28	chr3:159483200-159484200	Bivalent Enhancer	Fetal Thymus	thymus
29	chr3:159483200-159484400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr3:159483400-159484200	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr3:159483400-159484800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr3:159483400-159484800	Flanking Active TSS	Hela-S3	cervix
33	chr3:159483600-159484200	Enhancers	Colonic Mucosa	Colon
34	chr3:159483600-159484200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
35	chr3:159483600-159484400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:159483600-159484400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr3:159483600-159484400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:159483600-159484400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
39	chr3:159483600-159484600	Enhancers	Liver	Liver
40	chr3:159483600-159484800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr3:159483600-159493000	Weak transcription	Gastric	stomach
42	chr3:159483800-159484200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr3:159483800-159484200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr3:159483800-159484200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
45	chr3:159483800-159484200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:159483800-159484200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr3:159483800-159484200	Bivalent Enhancer	Fetal Intestine Large	intestine
48	chr3:159483800-159484400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:159483800-159484400	Flanking Active TSS	Fetal Brain Female	brain
50	chr3:159483800-159484400	Flanking Active TSS	Fetal Heart	heart

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