Variant report

Variant	rs13080768
Chromosome Location	chr3:159522065-159522066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159479968..159483823-chr3:159521256..159524933,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12629172	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12631468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13064339	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13065938	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13065987	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13066560	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13067050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13072356	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13075534	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13078322	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13080307	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085339	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13088481	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13088959	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13100614	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16830741	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16830748	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2076889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34682429	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35035161	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35165740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35527279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35792854	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3892994	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56077320	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58755984	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61597037	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71625413	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
3	chr3:159506400-159522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:159513400-159522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:159513400-159523600	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:159515800-159522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:159516000-159522800	Weak transcription	Aorta	Aorta
8	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:159516400-159522400	Enhancers	Osteobl	bone
10	chr3:159517000-159522400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:159517200-159522200	Weak transcription	HSMMtube	muscle
12	chr3:159517200-159522400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:159517200-159523200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:159517200-159524000	Weak transcription	Liver	Liver
15	chr3:159517400-159522200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:159517600-159522400	Weak transcription	Right Ventricle	heart
17	chr3:159517600-159522600	Weak transcription	Adipose Nuclei	Adipose
18	chr3:159517600-159523200	Weak transcription	Placenta	Placenta
19	chr3:159517600-159524200	Weak transcription	NHEK	skin
20	chr3:159517800-159522600	Weak transcription	HMEC	breast
21	chr3:159518000-159524400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:159518200-159522200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:159518200-159522800	Weak transcription	Fetal Intestine Small	intestine
24	chr3:159518200-159522800	Weak transcription	Lung	lung
25	chr3:159518400-159522400	Weak transcription	Right Atrium	heart
26	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:159518600-159522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:159518600-159522400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:159518600-159522400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:159518600-159523000	Enhancers	Fetal Heart	heart
31	chr3:159518800-159522600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:159518800-159524400	Weak transcription	Left Ventricle	heart
33	chr3:159518800-159531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:159519000-159522600	Weak transcription	NHDF-Ad	bronchial
35	chr3:159520000-159526200	Enhancers	Brain Substantia Nigra	brain
36	chr3:159520000-159526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr3:159520200-159522400	Enhancers	Brain Hippocampus Middle	brain
38	chr3:159520200-159523200	Enhancers	HUVEC	blood vessel
39	chr3:159520400-159522400	Enhancers	Stomach Smooth Muscle	stomach
40	chr3:159520400-159523400	Enhancers	NH-A	brain
41	chr3:159520600-159522400	Weak transcription	Brain Anterior Caudate	brain
42	chr3:159521000-159522200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:159521000-159522400	Weak transcription	NHLF	lung
44	chr3:159521200-159523400	Enhancers	A549	lung
45	chr3:159521200-159523600	Enhancers	Muscle Satellite Cultured Cells	--
46	chr3:159521600-159522400	Enhancers	Colon Smooth Muscle	Colon
47	chr3:159521600-159522600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:159521600-159522600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:159521600-159522800	Weak transcription	HSMM	muscle
50	chr3:159521600-159526200	Weak transcription	Fetal Stomach	stomach

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