Variant report

Variant	rs35035161
Chromosome Location	chr3:159501836-159501837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12629172	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12631468	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13064339	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13065938	0.97[AMR][1000 genomes]
rs13065987	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13066560	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13067050	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13072356	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13075534	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13078322	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13080307	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13080768	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085339	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13088481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13088959	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13100614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16830741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16830748	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2076889	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34586932	0.91[ASN][1000 genomes]
rs34682429	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35165740	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35527279	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35792854	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3892994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680522	0.93[ASN][1000 genomes]
rs56077320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58755984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61597037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441272	0.91[ASN][1000 genomes]
rs71625413	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4084	chr3:159492488-159513251	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:159493600-159504400	Weak transcription	Right Atrium	heart
3	chr3:159493600-159505200	Weak transcription	Lung	lung
4	chr3:159493600-159505400	Weak transcription	Fetal Stomach	stomach
5	chr3:159493600-159509200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:159493600-159516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:159493800-159502800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:159494800-159503000	Weak transcription	NHDF-Ad	bronchial
9	chr3:159495000-159502000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:159495000-159503000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:159495000-159503200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:159495200-159502000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:159495200-159502600	Weak transcription	HUVEC	blood vessel
14	chr3:159495200-159503000	Weak transcription	NHLF	lung
15	chr3:159495200-159503200	Weak transcription	Adipose Nuclei	Adipose
16	chr3:159495200-159504400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:159495200-159504600	Weak transcription	HSMMtube	muscle
18	chr3:159498600-159504400	Weak transcription	Esophagus	oesophagus
19	chr3:159499200-159502600	Enhancers	Stomach Smooth Muscle	stomach
20	chr3:159499400-159502400	Enhancers	Brain Angular Gyrus	brain
21	chr3:159499800-159503400	Enhancers	Brain Cingulate Gyrus	brain
22	chr3:159499800-159506400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:159500000-159503600	Enhancers	Brain Hippocampus Middle	brain
24	chr3:159500400-159509200	Enhancers	HepG2	liver
25	chr3:159500600-159502000	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:159500800-159502800	Weak transcription	Stomach Mucosa	stomach
27	chr3:159501000-159502200	Enhancers	A549	lung
28	chr3:159501000-159502800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:159501000-159503400	Enhancers	Placenta	Placenta
30	chr3:159501000-159508000	Enhancers	Colon Smooth Muscle	Colon
31	chr3:159501200-159502400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr3:159501200-159502800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:159501200-159502800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:159501200-159503400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:159501200-159503400	Enhancers	Placenta Amnion	Placenta Amnion
36	chr3:159501200-159503400	Flanking Active TSS	NHEK	skin
37	chr3:159501200-159504400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:159501200-159506200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:159501400-159502600	Weak transcription	Osteobl	bone
40	chr3:159501400-159502800	Flanking Active TSS	HMEC	breast
41	chr3:159501400-159503400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:159501400-159503400	Enhancers	Aorta	Aorta
43	chr3:159501400-159504400	Weak transcription	Right Ventricle	heart
44	chr3:159501600-159502200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr3:159501600-159502400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr3:159501600-159502400	Enhancers	GM12878-XiMat	blood
47	chr3:159501600-159502400	Genic enhancers	HSMM	muscle
48	chr3:159501600-159502800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:159501600-159503000	Weak transcription	NH-A	brain
50	chr3:159501600-159504400	Weak transcription	Liver	Liver

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